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Haloferacaceae

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(Redirected from Halopelagius) Family of bacteria

Haloferacaceae
Haloquadratum walsbyi
Scientific classification
Domain: Archaea
Phylum: Euryarchaeota
Class: Halobacteria
Order: Haloferacales
Family: Haloferacaceae
Gupta et al. 2015
Genera

Haloferacaceae is a family of halophilic, chemoorganotrophic or heterotrophic archaea within the order Haloferacales. The type genus of this family is Haloferax. Its biochemical characteristics are the same as the order Haloferacales.

The name Haloferacaceae is derived from the Latin term Haloferax, referring to the type genus of the family and the suffix "-ceae", an ending used to denote a family. Together, Haloferacaceae refers to a family whose nomenclatural type is the genus Haloferax.

Taxonomy and molecular signatures

As of 2021, Haloferacaceae contains 10 validly published genera. This family can be molecularly distinguished from other Halobacteria by the presence of five conserved signature proteins (CSPs) and four conserved signature indels (CSIs) present in the following proteins: thermosome, ribonuclease BN and hypothetical proteins.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI).

16S rRNA based LTP_10_2024 53 marker proteins based GTDB 09-RS220

Natronoarchaeaceae

Halorubraceae

Haloparvum *

Halopenitus

Halorubrum

Haloferacaceae

Salinirubrum

Halalkaliarchaeum

Halolamina

Halobaculum

Haloplanus *

Halalkalirubrum

Natronocalculus

Halohasta

Halonotius

Halogranum *

Halobium

Halegenticoccus *

Haloprofundus *

Salinigranum

Haloferax *

Halopelagius *

Halogeometricum *

Halobellus * (incl. Haloquadratum *)

Haloferacaceae

Salinirubrum corrig. Cui & Qiu 2014

Haloplanus Elevi Bardavid et al. 2007

Halobium Mori et al. 2016

Halogranum Cui et al. 2010

Halegenticoccus Liu et al. 2020

Haloprofundus Zhang et al. 2017

Salinigranum Cui & Zhang 2014

Haloferax Torreblanca et al. 1986

Halopelagius Cui et al. 2010

Halogeometricum Montalvo-Rodriguez et al. 1998

Haloquadratum Burns et al. 2007

Halobellus Cui et al. 2011

Halobaculum Oren et al. 1995

Halolamina Cui et al. 2011

"Halalkalirubrum" Zuo et al. 2021

"Natronocalculus" Sorokin et al. 2023

Halohasta Mou et al. 2013

Halonotius Burns et al. 2010

Halalkaliarchaeum Sorokin et al. 2019

Halopenitus Amoozegar et al. 2012

Haloparvum Chen et al. 2016

Halorubrum McGenity & Grant 1996

Note: * Haloferacaceae

See also

References

  1. ^ Gupta, Radhey S.; Naushad, Sohail; Baker, Sheridan (2015-03-01). "Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov., containing the novel families Haloferacaceae fam. nov. and Natrialbaceae fam. nov". International Journal of Systematic and Evolutionary Microbiology. 65 (Pt_3): 1050–1069. doi:10.1099/ijs.0.070136-0. ISSN 1466-5026. PMID 25428416.
  2. Grant, William D.; Kamekura, Masahiro; McGenity, Terry J.; Ventosa, Antonio (2015-09-14). "Halobacteria class. nov". Bergey's Manual of Systematics of Archaea and Bacteria: 1. doi:10.1002/9781118960608.cbm00026. ISBN 9781118960608.
  3. Oren, Aharon (2012-02-01). "Taxonomy of the family Halobacteriaceae: a paradigm for changing concepts in prokaryote systematics". International Journal of Systematic and Evolutionary Microbiology. 62 (2): 263–271. doi:10.1099/ijs.0.038653-0. ISSN 1466-5026. PMID 22155757.
  4. ^ "Family: Haloferacaceae". lpsn.dsmz.de. Retrieved 2021-06-27.
  5. J.P. Euzéby. "Haloferacaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2021-11-17.
  6. Sayers; et al. "Haloferacaceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-06-05.
  7. "The LTP". Retrieved 10 December 2024.
  8. "LTP_all tree in newick format". Retrieved 10 December 2024.
  9. "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
  10. "GTDB release 09-RS220". Genome Taxonomy Database. Retrieved 10 May 2024.
  11. "ar53_r220.sp_label". Genome Taxonomy Database. Retrieved 10 May 2024.
  12. "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2024.
Prokaryotes: Archaea classification
Domain
Archaea
Bacteria
Eukaryota
(major groups
Excavata
Diaphoretickes
Hacrobia
Cryptista
Rhizaria
Alveolata
Stramenopiles
Plants
Amorphea
Amoebozoa
Opisthokonta
Animals
Fungi
Mesomycetozoea)
Euryarchaeota
(Methanobacteriati)
"Hadarchaeota"
  • "Hadarchaeia"
    • "Hadarchaeales"
  • "Persephonarchaeia"
"Hydrothermarchaeota"
  • "Hydrothermarchaeia"
    • "Hydrothermarchaeales"
Methanobacteriota
Halobacteriota
Thermoplasmatota
  • "Izemarchaea"
    • "Thermoprofundales"
  • "Poseidoniia"
    • "Poseidoniales"
  • Thermoplasmata
    • "Aciduliprofundales"
    • "Gimiplasmatales"
    • "Halarchaeoplasmatales"
    • "Lunaplasmatales"
    • "Lutacidiplasmatales"
    • Methanomassiliicoccales
    • "Proteinoplasmatales"
    • "Sysuiplasmatales"
    • Thermoplasmatales
    • "Yaplasmatales"
DPANN
(Nanobdellati)
Proteoarchaeota
TACK
(Thermoproteati)
Thermoproteota
  • JANJXX01
    • "Panguiarchaeales"
  • Korarchaeia
    • "Korarchaeales"
  • Bathyarchaeia
    • "Bathyarchaeales"
    • "Bifangarchaeales"
    • "Hecatellales"
    • "Houtuarculales"
    • "Wuzhiqiibiales"
    • "Xuanwuarculales"
    • "Zhuquarculales"
  • Nitrososphaeria
  • "Methanomethylicia"
    • "Culexarchaeles"
    • "Methanohydrogenicales"
    • "Methanomethylarchaeales"
    • "Methanomethylicales"
    • "Methanomethylovorales"
    • "Nezhaarchaeales"
  • "Sulfolobia"
  • Thermoproteia
Asgardarchaeota
(Promethearchaeati)
Promethearchaeota
Heimdallarchaeota
  • Heimdallarchaeia
    • "Gerdarchaeales"
    • "Heimdallarchaeales"
    • "Hodarchaeales"
    • "Kariarchaeales"
  • "Njordarchaeia"
  • "Sifarchaeia"
    • "Borrarchaeales"
    • "Sifarchaeales"
  • "Tyrarchaeia"
  • "Wukongarchaeia"
Taxon identifiers
Haloferacaceae
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